Monday, 29 April 2013

New Parasite Strains Resistant To Malaria Drug


New Parasite Strains Resistant To Malaria Drug

Malaria is a mosquito-borne disease.Malaria is a mosquito-borne disease.
Scientists have identified new drug-resistant strains of the parasite that causes malaria.

A study by an international team of researchers says that gene analysis of malaria parasites has pinpointed western Cambodia as the hotspot of the new strains.

The study, published in the journal "Nature Genetics," says the strains are dangerously resistant to artesiminin, the front-line drug against the mosquito-borne disease.

Scientists sequenced the genomes of more than 800 samples of the malaria-causing parasite Plasmodium falciparum collected from around the world.

The 166 samples from western Cambodia stood out, with three distinct groups of drug-resistant parasites whose genetic mutations made them resistant to artesiminin.

The UN's World Health Organization says malaria causes around 650,000 deaths each year, mostly African children under five.

Thursday, 28 February 2013

Scientists Develop Spherical Nucleic Acids, Could Revolutionize Biomedicine awesome news on progress i nanotechnology

 
Evanston, IL (Scicasts) – Northwestern University’s Chad A. Mirkin, a world-renowned leader in nanotechnology research and its application, has invented and developed a powerful material that could revolutionize biomedicine: spherical nucleic acids (SNAs).
Potential applications include using SNAs to carry nucleic acid-based therapeutics to the brain for the treatment of glioblastoma, the most aggressive form of brain cancer, as well as other neurological disorders such as Alzheimer’s and Parkinson’s diseases. Mirkin is aggressively pursuing treatments for such diseases with Alexander H. Stegh, an assistant professor of neurology at Northwestern’s Feinberg School of Medicine.
“These structures are really quite spectacular and incredibly functional,” Mirkin said. “People don’t typically think about DNA in spherical form, but this novel arrangement of nucleic acids imparts interesting chemical and physical properties that are very different from conventional nucleic acids.”
Spherical nucleic acids consist of densely packed, highly oriented nucleic acids arranged on the surface of a nanoparticle, typically gold or silver. The tiny non-toxic balls, each roughly 15 nanometres in diameter, can do things the familiar but more cumbersome double helix can’t do:
  • SNAs can naturally enter cells and effect gene knockdown, making SNAs a superior tool for treating genetic diseases using gene regulation technology.
  • SNAs can easily cross formidable barriers in the human body, including the blood-brain barrier and the layers that make up skin.
  • SNAs don’t elicit an immune response, and they resist degradation, resulting in longer lifetimes in the body.
“The field of medicine needs new constructs and strategies for treating disease,” Mirkin said. “Many of the ways we treat disease are based on old methods and materials. Nanotechnology offers the ability to rapidly create new structures with properties that are very different from conventional forms of matter.”
Mirkin is the George B. Rathmann Professor of Chemistry in the Weinberg College of Arts and Sciences and professor of medicine, chemical and biological engineering, biomedical engineering and materials science and engineering. He is director of Northwestern’s International Institute for Nanotechnology (IIN).
Last year, Mirkin and Dr. Amy S. Paller, chair of dermatology and professor of paediatrics at Feinberg, were the first to demonstrate the use of commercial moisturizers to deliver gene regulation technology for skin cancer therapy. The drug, consisting of SNAs, penetrated the skin’s layers and selectively targeted disease-causing genes while sparing normal genes.
Image: Courtesy of Northwestern University
Image: Courtesy of Northwestern University
“We now can go after a whole new set of diseases,” Mirkin said. “Thanks to the Human Genome Project and all of the genomics research over the last two decades, we have an enormous number of known targets. And we can use the same tool for each, the spherical nucleic acid. We simply change the sequence to match the target gene. That’s the power of gene regulation technology.”
A member of President Obama’s Council of Advisors on Science and Technology, Mirkin is known for invention and development of biological and chemical diagnostic systems based upon nanomaterials. He is the inventor and chief developer of Dip-Pen Nanolithography, a groundbreaking nanoscale fabrication and analytical tool, and is the founder of four Chicago-based companies: AuraSense, AuraSense Therapeutics, Nanosphere and NanoInk.

Monday, 26 November 2012

Embryo survival gene may fight range of diseases

HONG KONG (Reuters) - A gene that keeps embryos alive appears to control the immune system and determine how it fights chronic diseases like hepatitis and HIV, and autoimmune diseases like rheumatoid arthritis, scientists said on Monday.
Although the experts have only conducted studies on the gene Arih2 using mice, they hope it can be used as a target for drugs eventually to fight a spectrum of incurable diseases.
Lead author Marc Pellegrini at the Walter and Eliza Hall Institute of Medical Research in Australia said the gene appears to act like a switch, flipping the immune system on and off.
"If the gene is on, it dampens ... the immune response. And if you switch it off, it greatly enhances immune responses," Pellegrini said in a telephone interview.
"It is probably one of the few genes and pathways that is very targetable and could lead to a drug very quickly."
Arih2 was first identified by another group of scientists in the fruit fly but it drew the interest of Pellegrini's team because of its suspected links to the immune system.
In a paper published in Nature Immunology, Pellegrini and his team described how mice embryos died when the gene was removed.
Next, they removed the gene from adult mice and noticed how their immune systems were boosted for a short period of time. But it quickly went into an overdrive and started attacking the rodents' own healthy cells, skin and organs.
"The mice survived for six weeks quite well. Then they started developing this very hyperactive immune responses and if you leave it for too long, it starts reacting against the body itself," Pellegrini said.
Pellegrini and his colleagues hope that scientists can study the gene further and use it as a drug target to fight a large spectrum of diseases.
"It's like an accelerator. In infectious diseases, you want to slam on the brakes on this gene, and for autoimmune diseases, you want to push the accelerator to make it work much harder to stop the whole immune response," said Pellegrini.
"The more the gene works, the less of an immune response there is. And the less active the gene is, the more the immune response is."

Real Benjamin Buttons Brothers: Matthew and Michael Clark Are Aging Backwards

By the looks of their home, Tony and Christine Clark are raising two rambunctious 7-year-old boys. Model train tracks and Monopoly pieces are scattered on tables and cartoons flicker on the TV set.

But the Clarks' two sons are grown men who share only the same interests and emotional fluctuations of little boys. Like the character portrayed by Brad Pitt in the 2008 film "The Curious Case of Benjamin Buttons," Matthew, 39, and Michael, 42, are aging backwards.

Diagnosed with a terminal form of leukodystrophy, one of a group of extremely rare genetic disorders that attack the Myelin, or white matter, in the nervous system, spinal cord, and brain. In the Clarks' case, the condition has not only eroded their physical capacities, but their emotional and mental states as well. Only six years ago, both brothers were holding down jobs and growing their families. Today, they spend their days in the care of their parents, both in their sixties, playing with Mr. Potato Head, fighting over Monopoly, and in rare lucid moments, struggling to understand why their lives have changed so dramatically.
</ifra e></div><p class="legend"><b>The 2008 fantasy movie is one of the few popular frames of reference for a very real and frightening disorder. </b></p>


Before the Clark Brothers were diagnosed, they were living independent lives. Michael served in the Royal Air Force and later became a cabinet maker. Matthew worked in a factory and was raising a teenage daughter. Tony and Christine, meanwhile, had retired and moved from the UK to Spain. Then in 2007, both of their sons fell off the radar. They stopped returning their parents' calls and texts, and as the Clark brothers' conditions developed, their lives fell apart. 

Should parents get their kids' genome sequenced?
Michael surfaced in a soup kitchen, and was referred to medical experts by social workers. After an MRI scan, he was diagnosed with the incurable degenerative disorder. Soon after Matthew received the same news. In the U.S. alone, about 1 in 40,000 children are born with a form of the neurodegenerative disease, according to Dr. William Kintner, President of the United Leukodystrophy Foundation. While some forms of the disorder are potentially treatable if discovered in the earliest stages and not all cause an emotional regression, the brothers are unlikely to be cured. "It's very difficult to do anything once progression has occurred," Dr. Kintner tells Yahoo! Shine.
With their train set.(Courtesy of Channel4)
As of April, when the Clarks were first written about in the British press, their mental age was 10.
"We will be out walking and things which might interest a toddler interest them, the other day we were walking home when Michael saw a balloon and pointed it out to us," father Tony Clark, told The Telegraph last spring.
Today, the brothers are even younger mentally.
"Just like small children, they wake up a lot during the night," mom Christine said in an interview published in The Independent this week. "I was up seven times with them last night."
After learning of their diagnoses, Tony and Christine returned to the UK and moved in with their sons. Their daily struggles as a family have been chronicled in a British documentary, "The Curious Case of the Clark Brothers," airing Monday in the UK.

Earlier this year, Matthew became a grandfather, when his daughter had a son. But the news for the family was bittersweet, as the Clark brothers' mental age continued to creep backwards.
"There's no return to them being cute little boys," said Christine, who regularly manages their tantrums and fights over Monopoly. "They're big strong men—and that presents a quite different set of problems."
More recently, even their physical strength began deteriorating.
"A few weeks ago, they could still manage with a knife and fork, but now that's getting too difficult for them—they get the food onto their forks, but somehow it all falls off before it reaches their mouths," she said.

Donors and genetic disorders: how much do you know?
Now walking is the next hurdle; Matthew is already confined to a wheelchair.

"The likelihood that they're on a terminal course is fairly certain, but who knows?" says Dr. Kintner, who is familiar with the Clark case but didn't meet the brothers. "If they were citizens of U.S., we'd try to get them to the National Institute of Health for diagnostic work, but in the UK the system is different. There is no comparable organization with genetic diseases, so it's a little more difficult there."

Dr. Kintner estimates there are several million cases of one of the estimated 40 types of leukodystrophies in the U.S., but an exact number is hard to pinpoint. The different forms of the disorder are still being identified and tests for each known type are still being developed. "It's going to take a long time," says Dr. Kintner. "I hope in my lifetime I see a cure for some of them."
A preview for the British documentary on the Clark Brothers airing on the UK's Channel 4.

Tuesday, 20 November 2012

New risk gene for Alzheimer's

CHICAGO (Reuters) - Two international teams of scientists have identified a rare mutation in a gene linked with inflammation that significantly increases the risk for the most common form of Alzheimer's disease, the first such discovery in at least a decade.
The findings, published on Wednesday in the New England Journal of Medicine, offer new insights into the underpinnings of Alzheimer's, a deadly, brain-wasting disease that robs people of their memories, their independence and their lives.
In separate studies, teams led by privately held deCode Genetics and John Hardy of University College London found that people with a mutation in a gene called TREM2 were four times as likely to have Alzheimer's as people who did not have the gene.
"It quadruples the risk of Alzheimer's," said Dr. Kari Stefansson of Reykjavik-based deCode in a telephone interview.
The level of risk compares with ApoE4, the best-known genetic cause of late-onset Alzheimer's, the form of the disease that occurs in older adults.
But this new gene variant is 10 times more rare than ApoE4, which is present in about 40 percent of people with late-onset Alzheimer's.
Rare or not, scientists say the discovery represents a big breakthrough for Alzheimer's research.
"This is one of the most common, most devastating illnesses in humans and we still don't have a very good understanding of what causes the disease," said Dr. Allan Levey, director of the Emory Alzheimer's Disease Center of Excellence in Atlanta, which helped confirm the deCode findings.
"In my mind, this is very important. It gives us another important clue as to one of the biological factors that contribute to causing the disease," he said.
Despite numerous costly attempts, drug companies have been stymied in their efforts to develop drugs that can alter the steady course of Alzheimer's, which affects more than 5 million Americans and costs the United States more than $170 billion annually to treat.
Current research efforts have focused on removing sticky clumps of a protein called beta amyloid that accumulate in the brains of people with Alzheimer's disease. But several drugs that have been developed to remove these proteins have failed to produce a significant improvement in patients with mild to moderate forms of dementia.
With the new finding, researchers say the focus will turn on the role of inflammation in Alzheimer's disease.
INFLAMMATORY RESPONSE
TREM2 is a gene that affects a protein expressed on the surface of cells in various tissues that "clean up garbage," Stefansson said. These cells, called microglia, are often associated with inflammatory response.
A genetic mutation that alters the function of these housekeeping cells could affect how well the brain deals with an excess of toxic proteins from beta amyloid, Stefansson and others said.
And that suggests that even though TREM2 is rare, the way it works in the brain may be important for brain health.
"It is certainly plausible that TREM2 is involved in all of Alzheimer's disease," said Andrew Singleton of the National Institute on Aging, who worked on the paper with Hardy and colleagues at University College London.
"I think it may be very generalizable," Singleton said.
For their study, Hardy and colleagues used a number of gene sequencing techniques to study 988 people with Alzheimer's disease and 1,004 healthy volunteers.
The team also tested brain tissues from deceased Alzheimer's patients, and they studied the expression of the TREM2 gene in genetically engineered mice.
For the deCODE study, researchers sequenced the genomes of 2,261 Icelanders and identified variations likely to affect protein function. Then, they looked specifically for these variants in people with Alzheimer's and those with healthy brains, and found those with the TREM2 variant had a significantly higher risk.
To make sure the gene was not specific to Iceland, they replicated their findings in populations at Emory University in the United States, as well as groups in Norway, the Netherlands and Germany.
"We've essentially found exactly the same thing," said Singleton of the NIA, which is part of the National Institutes of Health. "In a way which you don't often see in science, the two studies point in the same direction.
In July, a team at deCODE discovered a rare mutation in a gene called APP that protects against Alzheimer's.
"It is a complex disease," Stefansson said. "I'm not surprised to see there are many ways to bring about this deterioration in cognitive function."
Levey said while the TREM2 mutation is rare, it is likely changing the function of brain cells.
"It helps identify the microglial cells as an important possible (drug) target," he said.
Dr. Ralph Nixon, director of the New York University Center of Excellence on Brain Aging and a scientific adviser to the Alzheimer's Association, said the findings suggest there are likely many more genes that increase the risk of Alzheimer's disease.
"It's a good illustration that we need to intensify this type of research and identify what these genes are doing so we can finally translate it into therapy," he said.

Sunday, 18 November 2012

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Dear all, Since we are getting many new players from the recent Nova program, we decided to launch a new lab puzzle, "Sea Turtle" to guide them into EteRNA lab. The problem focuses on simple design problem - you have to design RNA sequence..
Dear all, Here is a log of the dev chat session today. Thanks all for participating! EteRNA team Adrien Treuille: So players... before we get started with the player/dev chat meeting. [6:02 PM] mat747: what is the topic [6:02..
Dear all, We are glad to announce that Eterna 2.0 has finally been launched. As many things have changed at once, there might be bugs/problems we did not notice. Please report them here, and we'll fix them as soon as possible. Currently..
Dear all, we are glad to announce that round 4 results of "FMN Switch 2.0" have been published. The rewards have been distributed as well. Click here to see the results in the game Unfortunately we had 5 failed sequences in this round as wel..
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Vote for a short documentary on Foldit!

A short documentary on Foldit is a semi-finalist for the FOCUS FORWARD Filmmaker Competition! You can help it win the Audience Favorite award by voting for it online. The video is here, and the "VOTE" button is in the top-right of the video.
http://vimeo.com/focusforwardfilms/semifinalists/51888393
(Thu, 11/15/2012 - 16:24  |  1 comment)

Welcome new users

Tonight on PBS, scienceNOW aired an episode highlighting Foldit. This is bringing an influx of new users to our community. You may find the website and game client running slower. Please bear with us while the servers are under heavy load.
For the new players, go here (http://fold.it/portal/node/988864) to see how to download/install the game. Then Check out the FAQ (http://fold.it/portal/info/faq) and Wiki (http://foldit.wikia.com/) for more. If you are in the game, feel free to ask questions in the chat box.
Welcome to Foldit (=
NOTE: If you get stuck on the intro levels, check out the wiki for hints: http://foldit.wikia.com/wiki/Tutorial_Puzzles
(Thu, 11/15/2012 - 05:53  |  4 comments)


New Release

Hey everyone,
We've just pushed the changes that were in the developer preview into the main game. You can find a list of the new features and fixes below:
General
* The Disable and Remove Bands buttons now have new icons
* Windows Only: Added an option to allow GUI scripts to run while the client is minimized
- "update_while_minimized" : "1"
* Hovering over the undo graph will now show the score
LayerDesign
* This is a new feature that will be enabled in some design puzzles. It is intended to give you more feedback about which amino acids are appropriate at each segment. When a certain amino acid is disabled on a segment you will see the button grayed out in the mutate tool. Please see http://fold.it/portal/node/993855 for more info.
(Mon, 11/12/2012 - 23:38  |  0 comments)

Triple Scientist Chat transcript posted

The transcript from today's Scientist Chat about Symmetry has been posted:
http://fold.it/portal/node/993836
All previous chat transcripts can be found here:
http://fold.it/portal/chats
(Wed, 10/31/2012 - 22:34  |  0 comments)